Returns a mathematical summary of the startle data. Returned list with two data frames. First contains calculated median, interquartile range, mean and standard deviation for values pertaining to the period of the pulse and in between pulses. The second contains the results of the desired statistical test, by default Wilcox is used. User can specify which test will be used with method argument.
summariseStartle(df, method = "wilcox.test")
| df | A dataframe returned by loadStartleData function. |
|---|---|
| method | A parameter defining what type of statistical testing will be used. |
A mathematical summary in a list.
# Load example data df <- ratpasta_demo # running examples summariseStartle(df)#> $Values #> # A tibble: 8 x 9 #> # Groups: stage, impulse [4] #> stage impulse lgroup `mean(value)` `sd(value)` `min(value)` `median(value)` #> <fct> <fct> <chr> <dbl> <dbl> <dbl> <dbl> #> 1 W/O … No I ctr 3.25 3.46 0.00195 2.27 #> 2 W/O … No I stz 6.37 13.4 0.0000971 2.41 #> 3 W/O … I ctr 11.4 23.1 0.00195 3.84 #> 4 W/O … I stz 62.1 112. 0.00255 26.3 #> 5 W PI No I ctr 4.88 5.37 0.00195 3.06 #> 6 W PI No I stz 2.92 3.43 0.0000971 1.86 #> 7 W PI I ctr 7.99 10.2 0.00195 4.48 #> 8 W PI I stz 8.94 14.5 0.0000971 3.44 #> # … with 2 more variables: `IQR(value)` <dbl>, `max(value)` <dbl> #> #> $Ratio #> # A tibble: 4 x 8 #> # Groups: stage [2] #> stage lgroup `mean(ratio)` `sd(ratio)` `min(ratio)` `median(ratio)` #> <fct> <chr> <dbl> <dbl> <dbl> <dbl> #> 1 W/O … ctr 1.83 0.897 0.885 1.48 #> 2 W/O … stz 11.4 12.5 0.607 4.05 #> 3 W PI ctr 1.61 0.972 0.667 1.26 #> 4 W PI stz 1.95 0.682 0.756 1.86 #> # … with 2 more variables: `IQR(ratio)` <dbl>, `max(ratio)` <dbl> #> #> $RatioS #> # A tibble: 6 x 8 #> .y. group1 group2 p p.adj p.format p.signif method #> <chr> <chr> <chr> <dbl> <dbl> <chr> <chr> <chr> #> 1 ratio ctr W/O PP stz W/O PP 0.0155 0.077 0.0155 * Wilcoxon #> 2 ratio ctr W/O PP ctr W PP 0.211 0.35 0.2110 ns Wilcoxon #> 3 ratio ctr W/O PP stz W PP 0.174 0.35 0.1738 ns Wilcoxon #> 4 ratio stz W/O PP ctr W PP 0.00427 0.026 0.0043 ** Wilcoxon #> 5 ratio stz W/O PP stz W PP 0.0460 0.14 0.0460 * Wilcoxon #> 6 ratio ctr W PP stz W PP 0.0181 0.077 0.0181 * Wilcoxon #>